个人简历:
1993-1997 山东大学微生物学 学士
1997-2003 中国科学院生物物理研究所 博士
2003-2010 纽约纪念斯隆凯特琳癌症中心
博士后助理研究员(10/2003), 博士后副研究员(8/2005), 高级研究科学(11/2006)
2010-2016 清华大学医学院 副教授
2016-至今 清华大学医学院 教授
主要科研领域及方向:
本实验室研究方向是表观遗传调控的分子结构基础。表观遗传调控即染色质水平的遗传信息组织与解读。一般而言,表观遗传机制包括组蛋白或DNA修饰、组蛋白变体、染色质重塑以及非编码RNA等。表观遗传在从基因表达调控到细胞命运决定的众多生物学过程中发挥着关键作用。与此同时,越来越多证据揭示表观遗传调控异常会导致各种人类疾病的发生,尤其是癌症。我们主要采用生物大分子晶体学,并结合其它生物物理学、生物化学以及细胞生物学技术,研究表观遗传调控过程中的分子识别与催化事件。此外,我们也在积极开展基于结构的表观调控因子分子改造和基于结构的表观药物发现研究。
代表论文:
1. Zhang X, Zhao D, Xiong X, He Z, and Li H* (2016) Multifaceted histone H3 methylation and phosphorylation readout by the plant homeodomain finger of human nuclear antigen Sp100C. J Biol Chem (doi:10.1074/jbc.M116.721159)(*correspondence)
2. Zhao D, Guan H, Zhao S, Mi W, Wen H, Li Y, Zhao Y, Allis CD, Shi X*, and Li H* (2016) YEATS2 is a selective histone crotonylation reader. Cell Research (doi:10.1038/cr.2016.49)(*correspondence)
3. Li Y, Sabari BR, Panchenko T, Wen H, Zhao D, Guan H, Wan L, Huang H, Tang Z, Zhao Y, Roeder R. Shi X, Allis CD*, and Li H* (2016) Molecular coupling of histone crotonylation and active transcription by AF9 YEATS domain. Mol Cell 62: 181-193 (*correspondence)
4. Noh K, Allis CD*, and Li H* (2016) Reading between the lines: “ADD”-ing histone and DNA methylation marks towards a new epigenetic “sum”. ACS Chem Biol 11: 554-563 (*correspondence)(invited review)
5. Zhao D, Zhang X, Guan H, Xiong X, Shi X, Deng H, and Li H* (2016) The BAH domain of BAHD1 is a histone H3K27me3 reader. Protein Cell 7: 222-226 (*correspondence)
6. Wu R, Yue Y, Zheng X, and Li H* (2015) Molecular basis for histone N-terminal methylation by NRMT1. Genes Dev 29: 2337-2342 (*correspondence)
7. Kamps J, Huang J, Poater J, Xu C, Pieters B, Dong A, Min J, Sherman W, Beuming T, Bickelhaupt FM, Li H, and Mecinovic J* (2015) Chemical basis for the recognition of trimethyllysine by epigenetic reader proteins. Nat Commun 6: 8911
8. Noh K, Wang H, Kim HR, Wenderski W, Fang F, Li CH, Dewell S, Hughes SH, Melnick AM, Patel DJ, Li H*, and Allis CD* (2015) Engineering of a histone-recognition domain in Dntm3a alters the epigenetic landscape and phenotypic features of mouse ESCs. Mol Cell 59: 89-103 (*correspondence)
9. Zhao S and Li H* (2015) Crystallography-based mechanistic insights into epigenetic regulation. Elsevier Publisher- Y. G. Zheng (ed.) Epigenetic Technological Applications: 125-147 (*correspondence) (book chapter)
10. Li H*, Zhao S, and Patel DJ (2015) Histone recognition by tandem modules and modulation by multiple PTMs. Springer Books - Life Sciences and Biomedicine, M.-M. Zhou (ed.) Histone Recognition: 149-172 *correspondence) (book chapter)
11. Zhao S, Su X, Li Y, and Li H* (2015) Research advances in the mechanism of histone methylation recognition by reader modules. Science & Technology Review, 33(8): 94-100 (*correspondence)(invited review)
12. Noh K, Maze I, Zhao D, Xiang B, Wenderski W, Lewis PW, Shen L, Li H* and Allis CD* (2015) ATRX tolerates activity-dependent histone H3 "methyl/phos switching" to maintain repetitive element silencing in neurons. Proc Natl Acad Sci USA 112(22): 6820-6827 (*correspondence)
13. Li Y, Wen H, Shi X and Li H* (2015) Determination of protein-DNA (ZMYND11-DNA) interaction by a label-free biolayer interferometry assay. Bio-protocol 5(4): e1402 (*correspondence)
14. Li Y, Wen H, Xi Y, Tanaka K, Wang H, Peng D, Ren Y, Jin Q, Dent SYR, Li W, Li H*, and Shi X* (2014) AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation. Cell 159: 558-571 (*correspondence)
15. Wen H, Li, Y, Xi Y, Jiang S, Stratton S, Peng D, Tanaka K, Ren Y, Xia Z, Wu J, Li B, Barton MC, Li W*, Li H*, and Shi X* (2014) ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression. Nature 507: 263-268 (*correspondence)
16. Su X, Zhu G, Ding X, Lee SY, Dou Y, Zhu B, Wu W*, and Li H* (2014) Molecular basis underlying histone H3 lysine-arginine methylation patter readout by Spin/Ssty repeats of Spindlin1. Genes Dev 28: 622-636 (*correspondence)
17. Wee S, Dhanak D, Li H, Armstrong SA, Copeland RA, Sims R, Goodman VL, Baylin SB, Liu XS, Tarakhovsky A, and Schweizer L* (2014) Targeting epigenetic regulators for cancer therapy. Ann NY Acad Sci 1309: 30-36
18. Zheng X, Gooi, LM, Wason A, Gabriel E, Mehrjardi NZ, Yang Q, Zhang X, Debec A, Basiri M, Avidor-Reiss T, Pozniakovsky A, Poser I, Saric T, Hyman AA, Li H* and Gopalakrishnan J* (2014) The conserved TCP domain of Sas-4/CPAP is essential for Peri-centriolar material tethering during centrosome biogenesis. Proc Natl Acad Sci USA 111: E345-E363 (*correspondence)
19. Li Y and Li H* (2012) Many keys to push: diversifying the ‘readership’ of plant homeodomain fingers. Acta Biochim Biophys Sin 44 (1): 28-39 (*correspondence)
20. Iwase S, Xiang B, Ghosh S, Ren T, Lewis PW, Cochrane JC, Allis CD, Picketts DJ, Patel DJ*, Li H*, Shi Y* (2011) ATRX links atypical histone methylation recognition mechanisms to human mental retardation syndrome. Nat Struct Mol Biol 18: 769-776 (*correspondence)
21. Ruthenburg AJ, Li H, Milne T, Dou Y, McGinty RK, Yuen M, Muir TW, Patel DJ and Allis CD (2011) Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions. Cell 145: 692-706
22. Xiao A, Li H, Shechter D, Ahn SH, Fabrizio LA, Erdjument-Bromage H, Ishibe-Murakami S, Wang B, Tempst P, Hofmann K, Patel DJ, Elledge SJ and Allis CD. (2009) WSTF regulates the DNA damage response of H2A.X via a novel tyrosine kinase activity. Nature 457: 57-62
23. Li H#, Motamedi MR#, Yip CK, Wang Z, Walz T, Patel DJ and Moazed D (2009) An alpha motif at Tas3 C terminus mediates RITS cis-spreading and promotes heterochromatic gene silencing. Mol Cell 34(2): 155-167 (#equal contribution)
24. Li H, Taverna SD, Ruthenburg AJ, Patel DJ, and Allis CD (2007) Readout of chromatin marks by histone-binding modules. Nat Rev Mol Cell Biol 8(12) (http://www.nature.com/nrm/posters/histonemarks/histonemarks.pdf)
25. Ruthenburg AJ, Li H, Patel DJ, and Allis CD (2007) Multivalent engagement of chromatin modifications by linked binding modules. Nat Rev Mol Cell Biol 8(12): 983-994
26. Taverna SD#*, Li H#*, Ruthenburg AJ, Allis CD, and Patel DJ* (2007) How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers. Nat Struct Mol Biol 14(11): 1025-1040 (#equal contribution & *correspondence)
27. Li H, Fischle W, Wang W, Duncan EM, Liang L, Murakami-Ishibe S, Allis CD, and Patel DJ (2007) Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger. Mol Cell 28: 677-691
28. Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis, CD, and Patel DJ (2006) Molecular basis for site-specific readout of histone H3K4me3 trimethylation by the BPTF PHD finger of NURF. Nature 442: 91-95
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